Packages

object SmithWaterman extends WeightedScoreMetric[(Gap, Int)] with SmithWatermanImpl

Linear Supertypes
SmithWatermanImpl, GapSubstitution, WeightedScoreMetric[(Gap, Int)], AnyRef, Any
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Inherited
  1. SmithWaterman
  2. SmithWatermanImpl
  3. GapSubstitution
  4. WeightedScoreMetric
  5. AnyRef
  6. Any
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Visibility
  1. Public
  2. Protected

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.CloneNotSupportedException]) @native()
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def equals(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.Throwable])
  9. final def getClass(): Class[_ <: AnyRef]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  10. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  11. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  12. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  13. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  14. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  15. def score[T1](arr1: Array[T1], arr2: Array[T1], n: (Gap, Int)): Double
    Definition Classes
    SmithWaterman → WeightedScoreMetric
  16. def score[T1](arr1: Array[T1], arr2: Array[T1]): Double
    Definition Classes
    SmithWaterman → WeightedScoreMetric
  17. def smithWaterman[T](s1: Array[T], s2: Array[T], gap: Gap = LinearGap(), windowSize: Int = Integer.MAX_VALUE): Double
    Definition Classes
    SmithWatermanImpl
  18. def smithWatermanGotoh[T](s1: Array[T], s2: Array[T], gap: ConstantGap = ConstantGap()): Double
    Definition Classes
    SmithWatermanImpl
  19. def subst[T](a: Array[T], aIndex: Int, b: Array[T], bIndex: Int, gap: Gap): Double
    Attributes
    protected
    Definition Classes
    GapSubstitution
  20. final def synchronized[T0](arg0: => T0): T0
    Definition Classes
    AnyRef
  21. def toString(): String
    Definition Classes
    AnyRef → Any
  22. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.InterruptedException])
  23. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.InterruptedException])
  24. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.InterruptedException]) @native()

Inherited from SmithWatermanImpl

Inherited from GapSubstitution

Inherited from WeightedScoreMetric[(Gap, Int)]

Inherited from AnyRef

Inherited from Any

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