Packages

implicit object NeedlemanWunschScore extends NeedlemanWunschImpl with WeightedScoringAlgorithm[NeedlemanWunschAlgorithm, ConstantGap]

Implicit definition of needleman wunsch score for NeedlemanWunschAlgorithm.

Linear Supertypes
WeightedScoringAlgorithm[NeedlemanWunschAlgorithm, ConstantGap], NeedlemanWunschImpl, GapSubstitution, AnyRef, Any
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Inherited
  1. NeedlemanWunschScore
  2. WeightedScoringAlgorithm
  3. NeedlemanWunschImpl
  4. GapSubstitution
  5. AnyRef
  6. Any
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Visibility
  1. Public
  2. Protected

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.CloneNotSupportedException]) @native()
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def equals(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.Throwable])
  9. final def getClass(): Class[_ <: AnyRef]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  10. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  11. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  12. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  13. def needleman[T](s1: Array[T], s2: Array[T], gap: ConstantGap = ConstantGap()): Double
    Definition Classes
    NeedlemanWunschImpl
  14. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  15. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  16. def score(s1: String, s2: String): Double
    Definition Classes
    NeedlemanWunschScore → WeightedScoringAlgorithm
  17. def score(s1: String, s2: String, gap: ConstantGap = ConstantGap()): Double

    The score method takes two strings and returns needleman wunsch similarity between them.

    The score method takes two strings and returns needleman wunsch similarity between them.

    s1

    The 1st String.

    s2

    The 2nd String.

    returns

    Returns the needleman wunsch similarity between Strings s1 and s2.

    Definition Classes
    NeedlemanWunschScore → WeightedScoringAlgorithm
  18. def subst[T](a: Array[T], aIndex: Int, b: Array[T], bIndex: Int, gap: Gap): Double
    Attributes
    protected
    Definition Classes
    GapSubstitution
  19. final def synchronized[T0](arg0: => T0): T0
    Definition Classes
    AnyRef
  20. def toString(): String
    Definition Classes
    AnyRef → Any
  21. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.InterruptedException])
  22. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.InterruptedException])
  23. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws(classOf[java.lang.InterruptedException]) @native()

Inherited from WeightedScoringAlgorithm[NeedlemanWunschAlgorithm, ConstantGap]

Inherited from NeedlemanWunschImpl

Inherited from GapSubstitution

Inherited from AnyRef

Inherited from Any

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